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Specific Formulations to Prevent Receptor Desensitization
Bio
Balance is positioned for strategic alliances or cooperative
research and development agreements with pharmaceutical
or biotechnology companies to develop therapeutic compositions.
Instead of designing new molecules, this technology
produces enhanced compositions for superior therapeutic
end-points. These compositions are designed by combining
an agonist with an antagonist in an optimal ratio. These
"Optimal Ratio Combinations" (ORCs) have the
potential to save the expense and time associated with
screening for a therapeutic candidate molecule, in which
1 out of 10,000 explored molecules becomes a drug. The
time to market could be substantially reduced because
the component molecules in these compositions are well
known and characterized. These compositions have the
potential to save the pharmaceutical industry millions
of dollars per drug. The expertise Bio Balance brings
to these endeavors is the determination of the ORCs
as well as a general, biophysical description for modeling
the receptor response.
Molecular Modeling
Bio Balance is currently developing robust protocols
for construction of 3D models of molecules. These strategies
include: construction of 3D models of bioactive molecules
with their electronic properties included. This capability
impacts on both the design of bioactive agents and the
assessment of their adverse effects because it allows
explicit modeling of these agents with the proteins
most relevant to their mechanism of action.
Construction
of 3-Dimensional (3D) Models of Proteins
Bio Balance is currently developing protocols for construction
of 3D models of proteins. These strategies include:
construction of 3D models of globular proteins from
templates by homology modeling.
Computer
Modeling of Drug-Receptor Interactions
The
increase in the affinity of agonists with increasing
pH, together with experiments using thiol specific reagents,
indicate that G protein coupled receptors contain an
ionizable cysteine residue at the ligand binding site.
Since treatments with reducing agents have produced
functional activation and potentiated agonist stimulation,
it is likely that the sulfhydryl influences ligand efficacy
and receptor activation. Working together with Dr. Lester
Rubenstein, at Mount Sinai's Department of Physiology
and Biophysics, we have derived a two-state acid-base
model and a corresponding molecular model in order to
test the hypothesis that cysteine modulation of ligand
binding is related to ligand efficacy. We show that
pH-dependent binding is correlated with ligand efficacy
at the 5HT2A receptor. In general, efficacy is determined
by the preference of a ligand for the base over the
acid form of the receptor. Efficacy is also described
as a thermodynamic coupling free energy between a ligand
and the acid and base states of the receptor. Molecular
modeling of the third transmembrane domain containing
a conserved cysteine residue shows that efficacy can
be measured as the difference in the electrostatic interaction
energies of a ligand with the acid and base forms of
this receptor model. The cysteine residue provides the
largest contribution to this electrostatic interaction
energy difference, and thereby, ligand efficacy.
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